ABOUT THIS RECORDspecies: Curcuma longa
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTC miRNA* GATCATTATGGCAGTTTCATC mismatches: 2 bulges: 0 |
pre-miRNA
TGCATGTGCACCAAAAGTAGCTGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAA
AAAATAGATTAAAAATTCTGTATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCATCTGCTATTGGGGAGCACAA
dot-bracket secondary structure
....(((((.((((.(((((.(((((((((((..((((((((.((((.((((((.........(((..............(((.((((((((((......
))))))))))..)))................))).........))))))))))..))))))))..))))))))))).))))).))))...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCATGTGCACCAAAAGTAGCTGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAA
AAAATAGATTAAAAATTCTGTATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCATCTGCTATTGGGGAGCACAA
dot-bracket secondary structure
....(((((.((((.(((((.(((((((((((..((((((((.((((.((((((.........(((..............(((.((((((((((......
))))))))))..)))................))).........))))))))))..))))))))..))))))))))).))))).))))...))))).
SIMILARITIES| miRBase sbi-MIR167d: 0.00000004 PMRD sbi-miR167d: 0.00000004 microPC miR167: 6e-35 | UniProt no hits RFAM MIR167_1: 0.0000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
