ABOUT THIS RECORDspecies: Cynodon dactylon
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGGGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
GCAGGAGAAAGAGGTGAAAACGAAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTGCCAACCGGATCGGAGAGCTTCATCGATCGGCGGCCG
CTGCGGCTGGCGTGCGAGGGGCCAAGCATGGCCCTCTCTCTCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
...(((((.(((((.((....((((((..(((((.(((((((.(((((((((.(((((((((((((.....((((((.((...)).))))))))))))))
.))))).))))))))).))))))).))))).)))).))....))..))))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGGAGAAAGAGGTGAAAACGAAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTGCCAACCGGATCGGAGAGCTTCATCGATCGGCGGCCG
CTGCGGCTGGCGTGCGAGGGGCCAAGCATGGCCCTCTCTCTCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
...(((((.(((((.((....((((((..(((((.(((((((.(((((((((.(((((((((((((.....((((((.((...)).))))))))))))))
.))))).))))))))).))))))).))))).)))).))....))..))))).))))).
SIMILARITIES| miRBase zma-MIR160e: 6e-16 PMRD zma-miR160e: 6e-16 microPC miR160: 0.000000000002 | UniProt no hits RFAM mir-160: 0.00000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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