ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGAGTGCAGCGTTGATGAG miRNA* CGCCAGCGCTGCATTCGATAA mismatches: 1 bulges: 0 |
pre-miRNA
CATCATCGAGTGCAGCGTTGATGAGCTCCTATTACCGTATTTCGCTGGCTGTATCAAAAGTTCTGTCTCCTGCGCAGCGACTGTGAGGATTTCGCCAGCG
CTGCATTCGATAAT
dot-bracket secondary structure
....((((((((((((((((.((((.((((..(((......((((((((.....((.......))......)).))))))..))))))).)))).)))))
)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATCATCGAGTGCAGCGTTGATGAGCTCCTATTACCGTATTTCGCTGGCTGTATCAAAAGTTCTGTCTCCTGCGCAGCGACTGTGAGGATTTCGCCAGCG
CTGCATTCGATAAT
dot-bracket secondary structure
....((((((((((((((((.((((.((((..(((......((((((((.....((.......))......)).))))))..))))))).)))).)))))
)))))))))))...
SIMILARITIES| miRBase sbi-MIR397: 0.0003 PMRD vvi-miR397b: 0.0003 microPC no hits | UniProt no hits RFAM MIR397: 0.0004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
