ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAGAGGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCC
AAGCATACTCTCGCTCTTTCTCCTC
dot-bracket secondary structure
..((.((((.(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))
).))))))))...)))..)))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAAGAGGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCC
AAGCATACTCTCGCTCTTTCTCCTC
dot-bracket secondary structure
..((.((((.(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))
).))))))))...)))..)))).))
SIMILARITIES| miRBase ptc-MIR160d: 0.0000000004 PMRD oba-miR160: 4e-41 microPC miR160: 2e-42 | UniProt no hits RFAM mir-160: 7e-40 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045369) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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