ABOUT THIS RECORDspecies: Eucalyptus gunnii
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Eucalyptus gunnii Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTTTCAGGTCACCCCTT miRNA* TGGGTGATCTTGGTAACACAGG mismatches: 2 bulges: 1 |
pre-miRNA
TTAGAAAGGGAGGCATCTCCGATGGGTGATCTTGGTAACACAGGCGCTGTTCCTTTGCGTGTATTCGTATTTGTCCATATGATTCGTGCTATTACATCAG
CGCCTGTGTTTTCAGGTCACCCCTTTGAGATGATCACATTCTTT
dot-bracket secondary structure
..((((...((..((((((.((.((((((.(((((.(((((((((((((.......(((((...((((((......))))))..)))))........)))
)))))))))).))))))))))).)).)))))).))...))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAGAAAGGGAGGCATCTCCGATGGGTGATCTTGGTAACACAGGCGCTGTTCCTTTGCGTGTATTCGTATTTGTCCATATGATTCGTGCTATTACATCAG
CGCCTGTGTTTTCAGGTCACCCCTTTGAGATGATCACATTCTTT
dot-bracket secondary structure
..((((...((..((((((.((.((((((.(((((.(((((((((((((.......(((((...((((((......))))))..)))))........)))
)))))))))).))))))))))).)).)))))).))...))))..
SIMILARITIES| miRBase mtr-MIR398a: 0.0001 PMRD gma-miR398b: 0.0001 microPC miR398: 3e-54 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046008) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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