miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST000648
species: Festuca arundinacea
miRNA family: MIRf20
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGAAGAATCTGAAGCTGGAA

miRNA*
CAGCAATCACATACTTATGGA

mismatches: 4
bulges: 2

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pre-miRNA
GGAAGCTAACCCAGAAGAATCTGAAGCTGGAAGTTGAGCTACGCTCTTTCCACCTCTTAGGAAAGATGCCTTGCACTACGGTCTGATCAGGTACACTGCA
CTCTTTGAGGGAAGAGTTGACTGCCTAGGTGCGGGGCTAACGAAGGAGCTTGAACATCATAATGTTGAAAGCCTGCGCGTACCTTCCATGCCTGCTGATC
CTGACACGCTGCTACAGGATCTAATCCATGCTATGACGGTGCATGACTATGAACTCAACGAGATGCCCCACCTGATGGTTCGCGTGCAGGCAGAGGAAAA
TGATCTTGTCTTTCTGGCTCAGGAAAATGAGAAGCTTATGGCTGACCTTGAGAAGAGAAGGACACCTAACTTCAGCAATCACATACTTATGGACTACCTC
T


dot-bracket secondary structure
..........(((.(((.((.(((.((((.((((((.((...))(((((((........)))))))(((((.((((..(((.((.(((((((.....(((
(((.(((((.....(((((...((((.......))))...((..((.((((.(((((....)))))..)))))).)).(((((.((...((.((..((((
(((...........))))))).....)).))...)).))))).))))).....))))).))).)))...))))))))).))).)))))))))..(((...
...)))(((((((((..((((((.........((((...))))...))))))...)))))))))..))))))))))..))).)).))).)))........
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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