ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: miR159a
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCCTATCATTCCAATGA miRNA* TTTGGATTGAAGGGAGCTCTG mismatches: 3 bulges: 0 |
pre-miRNA
CTCCCTGGTTTTTGTGTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGGAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCAC
TATCCTACCTCCGTTTGAAACCAGGGAGATAGGCCTGTGGCTAGCATGACCGAGGAGCCGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGC
TCTGCATCTTGGCCTAGTTCATGTTATACTGT
dot-bracket secondary structure
......(((...((((...((((..((.(((((((((((.(((.(((((.((..((((..((...((((((((((...(((.((((.(((((....((((
...((((.((((............)))).))))...))))....))))).)))).)))...)))).)))))))).))))..)).))))).))).))))))
))))).))..)))).....))))....)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCCCTGGTTTTTGTGTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGGAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCAC
TATCCTACCTCCGTTTGAAACCAGGGAGATAGGCCTGTGGCTAGCATGACCGAGGAGCCGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGC
TCTGCATCTTGGCCTAGTTCATGTTATACTGT
dot-bracket secondary structure
......(((...((((...((((..((.(((((((((((.(((.(((((.((..((((..((...((((((((((...(((.((((.(((((....((((
...((((.((((............)))).))))...))))....))))).)))).)))...)))).)))))))).))))..)).))))).))).))))))
))))).))..)))).....))))....)))..
SIMILARITIES| miRBase far-MIR159: 3e-111 PMRD sar-miR159: 1e-91 microPC miR319: 1e-91 | UniProt no hits RFAM MIR159: 7e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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