ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCAAGGTGCCAAGCATG miRNA* GTGCCTGGCTCCCTGTATGCCA mismatches: 3 bulges: 1 |
pre-miRNA
TCAAGGTTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGCATGC
ATATATGTA
dot-bracket secondary structure
.......(((((.((((.((((.((.((((((((((...((((((.(((((((....)).)))))...)))))).)))))))))).)).)))).))))))
)))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAAGGTTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGCATGC
ATATATGTA
dot-bracket secondary structure
.......(((((.((((.((((.((.((((((((((...((((((.(((((((....)).)))))...)))))).)))))))))).)).)))).))))))
)))......
SIMILARITIES| miRBase bdi-MIR160c: 1e-37 PMRD sbi-miR160a: 3e-23 microPC miR160: 8e-42 | UniProt no hits RFAM mir-160: 5e-25 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045344) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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