ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIR2002
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATGAGATTTCCCCATAT miRNA* ATGGGGTAATCTCATCTCAAC mismatches: 1 bulges: 0 |
pre-miRNA
TGCTCCACACATCTCTGGGTTGAAGCGGTGTTGAGATGAGATTTCCCCATATACCACTTCTAGGCGGTCTTGGTAAGCGCCGCCGAACAACGAGTGATCG
CTTCGTCGGAGACCGGCGTATGGGGTAATCTCATCTCAACATTGCTTCCATCCGAGGTTTCTAATCTT
dot-bracket secondary structure
..........(((((.((((.((((((((((((((((((((((.((((((((.((..((((.((((((.((....)).))))))(((...(((....)))
.)))...))))...)).)))))))).)))))))))))))))))))))).)))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCTCCACACATCTCTGGGTTGAAGCGGTGTTGAGATGAGATTTCCCCATATACCACTTCTAGGCGGTCTTGGTAAGCGCCGCCGAACAACGAGTGATCG
CTTCGTCGGAGACCGGCGTATGGGGTAATCTCATCTCAACATTGCTTCCATCCGAGGTTTCTAATCTT
dot-bracket secondary structure
..........(((((.((((.((((((((((((((((((((((.((((((((.((..((((.((((((.((....)).))))))(((...(((....)))
.)))...))))...)).)))))))).)))))))))))))))))))))).)))))))))..........
SIMILARITIES| miRBase no hits PMRD tae-miR2002: 0.000008 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
