ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGATGGAGCAGAGCAAG mismatches: 4 bulges: 0 |
pre-miRNA
GAGGGGAGAGGAGACAGGGATGGAGCAGAGCAAGGGATGGGGCAAACAACAAACTTACTTTCTTGCTTCCACTACGTGTATGTGGATGTGACGAGTACAA
GGAGCAAACTGCGTGCAAGAGAGTTGTGAGAGATGAGAGCTGATGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCTGCATC
dot-bracket secondary structure
.(((((((......((((((.((.((((.(((.((((.(((((((.(((((...((((((((...(((.(((.((.(((((((((.(((...........
...)))..))))))))).....)).))).)))..))))).)))...)))))))))))).)))).))).)))).)).)))))).))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GAGGGGAGAGGAGACAGGGATGGAGCAGAGCAAGGGATGGGGCAAACAACAAACTTACTTTCTTGCTTCCACTACGTGTATGTGGATGTGACGAGTACAA
GGAGCAAACTGCGTGCAAGAGAGTTGTGAGAGATGAGAGCTGATGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCTGCATC
dot-bracket secondary structure
.(((((((......((((((.((.((((.(((.((((.(((((((.(((((...((((((((...(((.(((.((.(((((((((.(((...........
...)))..))))))))).....)).))).)))..))))).)))...)))))))))))).)))).))).)))).)).)))))).))))))).....
SIMILARITIES| miRBase osa-MIR408: 5e-20 PMRD osa-miR408: 5e-20 microPC miR408: 0.0002 | UniProt no hits RFAM MIR408: 9e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
