ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACTGAGGGAGTACT miRNA* TACTTCCTCCGTCCCAATAAG mismatches: 5 bulges: 0 |
pre-miRNA
CAGATACCATAGTTAAATCATATACTTCCTCCGTCCCAATAAGTGACTCGGTTTTGTCTAGATACGGTATCTAGACACAGTTTAGCATATCTACAAAAAG
TTGAGTCACTTATTTTGGGACTGAGGGAGTACTATATGTATGAACACTCGCG
dot-bracket secondary structure
...........(((....(((((((((((((.((((((((((((((((((.((((((..(((((......((((((...))))))..)))))))))))..
.)))))))))))..))))))).)))))))))...))))....))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGATACCATAGTTAAATCATATACTTCCTCCGTCCCAATAAGTGACTCGGTTTTGTCTAGATACGGTATCTAGACACAGTTTAGCATATCTACAAAAAG
TTGAGTCACTTATTTTGGGACTGAGGGAGTACTATATGTATGAACACTCGCG
dot-bracket secondary structure
...........(((....(((((((((((((.((((((((((((((((((.((((((..(((((......((((((...))))))..)))))))))))..
.)))))))))))..))))))).)))))))))...))))....))).......
SIMILARITIES| miRBase far-MIR1122: 0.000002 PMRD hpr-miR1120: 0.0000000001 microPC miR1439: 0.0000001 | UniProt no hits RFAM MIR1122: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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