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ABOUT THIS RECORD
ID:
MNEST000688
species:
Festuca pratensis
miRNA family:
miR159a
source:
miRNEST
Taxonomy by NCBI:
Festuca pratensis
Festuca
Loliinae
Poeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAGCTCCTATCATTCCAATGA
miRNA*
TTTGGATTGAAGGGAGCTCTG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CTCCCTGGTTTTTGTGTTTGGTTTTGAGGTG
GAGCTCCTATCATTCCAATGA
AAGGTCTTGCTAGAAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCAC
TATCCTACCTCCGTTTGAAACCAGGGAGATAGGCCTGTGGCTTGCATGACCGAGGAGCTGCATCGTCCCCTCGCTGGCCGCTC
TTTGGATTGAAGGGAGC
TCTG
CATCTAGGCCTAGTTCATGTTATACTGT
dot-bracket secondary structure
......(((...((((...(((((.((.(((
((((((((.(((.(((((.((
..((((..((....(((((((((.(((((.((((.(((((....((((
...((((.((((............)))).))))...))))....))))).)))).))))).)))).))))).)).))))..))
.))))).))).))))))
))))
).)).))))).....))))....)))..
SIMILARITIES
miRBase
far-MIR159
:
1e-101
PMRD
sar-miR159
:
6e-94
microPC
miR319
:
3e-89
UniProt
no hits
RFAM
MIR159: 1e-30
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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