ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf621
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACGTGCCCTGCTTCTCCA miRNA* GAGAAGGGGAGCACGTGCAAA mismatches: 0 bulges: 2 |
pre-miRNA
AAACTCACGGTGGAGAAGGGGAGCACGTGCAAAGTTCACTTAAACATAGGAACTTGCACGTGCCCTGCTTCTCCAACAAGAGAT
dot-bracket secondary structure
...(((....(((((((((((.((((((((((.((((............))))))))))))))))).))))))))....)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAACTCACGGTGGAGAAGGGGAGCACGTGCAAAGTTCACTTAAACATAGGAACTTGCACGTGCCCTGCTTCTCCAACAAGAGAT
dot-bracket secondary structure
...(((....(((((((((((.((((((((((.((((............))))))))))))))))).))))))))....)))..
SIMILARITIES| miRBase ghr-MIR164: 2e-42 PMRD gma-miR164: 0.000000001 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 0.00000002 | most similar mature miRNAs |
Identical with: ghr-MIR164 from miRBase (MNEST041047) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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