miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000757
species: Gossypium hirsutum
miRNA family: MIR413
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGTTTCTCTAGTTCTGCAC

miRNA*
TTAGGACTAGGAAACAGAAA

mismatches: 2
bulges: 1

View larger
pre-miRNA
CTACAGTTTAATGGCATTTAGACATCTGATGTTGGTTTCTCTAGTTCTGCACTTATTCATTTATAGATTGGAAATTTGTATCTTTGTGTTTAGGACTAGG
AAACAGAAA
GGTGTTCAAAAGTTCCATTTGGCCTTGG


dot-bracket secondary structure
.....(((.(((((.((((.(((((((....((.(((((.(((((((((.((.....((..((((((((...))))))))....)).)).))))))))))
)))).)).)
))))))...)))).))))).))).....



SIMILARITIES
miRBase no hits

PMRD ghr-miR413: 2e-37

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: ghr-miR413 from PMRD (MNEST048516)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;