ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: miR157d
source: miRNEST
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTATGCTTCTGTCATC miRNA* TGTTGACAGAAGATAGAGAGCAC mismatches: 1 bulges: 1 |
pre-miRNA
GAGGTGTTGGTTGAAGAGGAGGCACTGGTGATTGTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTTGCCTATGTGCATGCATCCCACTCCTTTGT
GCTCTCTATGCTTCTGTCATCATCACCTTTCATAGCCCCTCTTTTAAACCCTAAA
dot-bracket secondary structure
.(((.(((....(((((((.(((...((((((.(....(((((((((((((((((((((((.((.(((((.((......))..)))))....)).)))))
))))))))).))))))))).))))))).......))))))))))..))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGGTGTTGGTTGAAGAGGAGGCACTGGTGATTGTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTTGCCTATGTGCATGCATCCCACTCCTTTGT
GCTCTCTATGCTTCTGTCATCATCACCTTTCATAGCCCCTCTTTTAAACCCTAAA
dot-bracket secondary structure
.(((.(((....(((((((.(((...((((((.(....(((((((((((((((((((((((.((.(((((.((......))..)))))....)).)))))
))))))))).))))))))).))))))).......))))))))))..))))))...
SIMILARITIES| miRBase gra-MIR157b: 2e-46 PMRD gra-miR157b: 2e-46 microPC miR157: 0.0000000000005 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: gra-MIR157b from miRBase (MNEST041077) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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