ABOUT THIS RECORDspecies: Guizotia abyssinica
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Guizotia abyssinica Guizotia Millerieae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACGGCTTTCTTGAACTGCATG mismatches: 1 bulges: 0 |
pre-miRNA
ACTGCCATAAAAATGGTTCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCGGT
TCAATAAAGCTGTGGGAAGATAGAGACAGAATCAAAACCAGAAGA
dot-bracket secondary structure
)............(((((((.((((((((.((((((((((((.((((((((((.(((....(((((...)))))(((((......))))).))).))))))
)))).)))))))))))).)))))))).)))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTGCCATAAAAATGGTTCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCGGT
TCAATAAAGCTGTGGGAAGATAGAGACAGAATCAAAACCAGAAGA
dot-bracket secondary structure
)............(((((((.((((((((.((((((((((((.((((((((((.(((....(((((...)))))(((((......))))).))).))))))
)))).)))))))))))).)))))))).)))))))...........
SIMILARITIES| miRBase aly-MIR396a: 3.0E-11 PMRD ath-miRf11010-akr: 2.0E-12 microPC miR396: 2.0E-30 | UniProt no hits RFAM 6MIR396: 6.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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