ABOUT THIS RECORDspecies: Helianthus argophyllus
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Helianthus argophyllus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* TGTTTGTGCGTGAATCTAAGG mismatches: 1 bulges: 0 |
pre-miRNA
TCTTCAGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCAAATCACCAGTAATCATACTTTTTGTTTGTTTGTTTCCAGAC
AGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTG
dot-bracket secondary structure
......(((.((.((((((.((.((((((((((((((((((.((.((.(((((((.((.......(((....((.((.....)).)).)))......)).
))))).))..)).)).)))))))))))))))))).)).)))))).)).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTCAGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCAAATCACCAGTAATCATACTTTTTGTTTGTTTGTTTCCAGAC
AGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTG
dot-bracket secondary structure
......(((.((.((((((.((.((((((((((((((((((.((.((.(((((((.((.......(((....((.((.....)).)).)))......)).
))))).))..)).)).)))))))))))))))))).)).)))))).)).))).....
SIMILARITIES| miRBase tcc-MIR403a: 0.0000000001 PMRD stu-miR403: 0.000000008 microPC miR403: 6e-62 | UniProt no hits RFAM MIR403: 0.0000006 | most similar mature miRNAs |
Identical with: miR403 from microPC (MNEST046397) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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