ABOUT THIS RECORDspecies: Helianthus ciliaris
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGACAGAAGAGAGTGAGTAC miRNA* GCTCACTTCTCTTCCGTCAGCC mismatches: 1 bulges: 1 |
pre-miRNA
TTGGTTGAGAACTGACAGAAGAGAGTGAGTACACGCAGGCAATTGTATAGTGGACTATACTCTTGTTTGAGTTATGCGTGTGCTCACTTCTCTTCCGTCA
GCCCTTGCTCT
dot-bracket secondary structure
..((.((((..(((((.(((((((((((((((((((((((((..((((((....))))))..))))).......))))))))))))).))))))).))))
)..)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGTTGAGAACTGACAGAAGAGAGTGAGTACACGCAGGCAATTGTATAGTGGACTATACTCTTGTTTGAGTTATGCGTGTGCTCACTTCTCTTCCGTCA
GCCCTTGCTCT
dot-bracket secondary structure
..((.((((..(((((.(((((((((((((((((((((((((..((((((....))))))..))))).......))))))))))))).))))))).))))
)..)))).)).
SIMILARITIES| miRBase tcc-MIR156c: 0.000000000001 PMRD cpt-miR156a: 0.0000000004 microPC miR156: 9e-45 | UniProt no hits RFAM mir-156: 0.0000000001 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST044793) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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