ABOUT THIS RECORDspecies: Helianthus ciliaris
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACGGCTTTCTTGAACTGCATG mismatches: 1 bulges: 0 |
pre-miRNA
CAGCCATAAAAATGGTCCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTATCAGATCTGTGTTTATCATACAGTCTTTGCGGTT
CAATAAAGCTGTGGGAAGATAGAGACAGGATCAAACCAGAAGAA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((.(((.(((((....))))).((((((.....))))))))).)))))))
))).)))))))))))).)))))))).)))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGCCATAAAAATGGTCCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTATCAGATCTGTGTTTATCATACAGTCTTTGCGGTT
CAATAAAGCTGTGGGAAGATAGAGACAGGATCAAACCAGAAGAA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((.(((.(((((....))))).((((((.....))))))))).)))))))
))).)))))))))))).)))))))).)))))))...........
SIMILARITIES| miRBase lja-MIR396: 0.0000000001 PMRD ath-miRf11010-akr: 0.000000000008 microPC miR396: 5e-44 | UniProt no hits RFAM MIR396: 0.0000000006 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045341) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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