ABOUT THIS RECORDspecies: Helianthus ciliaris
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCTTCTTCT miRNA* ATGACGACGACGATGACGATG mismatches: 5 bulges: 0 |
pre-miRNA
TTATAATAGATGACGACGACGATGACGATGAAGATGAATATGACGGAGGAGAGAATGCTGATGTTGTTGGAAAAGCGCTGCACAAGTGCGCTCAAATATC
TGCTCAACTACGGAGTGACCTCTACGGTTCATCATCATCATCATCATCATCTTCTTCTGCTCAT
dot-bracket secondary structure
......((((.((.((.((.(((((.(((((.(((((((.....(((((.(((......((((((....((...(((((.....)))))..)).))))))
..))).(((....)))..)))))...))))))).))))).))))).)).)).)).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATAATAGATGACGACGACGATGACGATGAAGATGAATATGACGGAGGAGAGAATGCTGATGTTGTTGGAAAAGCGCTGCACAAGTGCGCTCAAATATC
TGCTCAACTACGGAGTGACCTCTACGGTTCATCATCATCATCATCATCATCTTCTTCTGCTCAT
dot-bracket secondary structure
......((((.((.((.((.(((((.(((((.(((((((.....(((((.(((......((((((....((...(((((.....)))))..)).))))))
..))).(((....)))..)))))...))))))).))))).))))).)).)).)).)))).....
SIMILARITIES| miRBase ath-MIR414: 0.000008 PMRD ath-miR414: 0.000008 microPC miR414: 0.000008 | UniProt no hits RFAM mir-598: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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