ABOUT THIS RECORDspecies: Helianthus paradoxus
miRNA family: MIR2025
source: miRNEST
Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCTGC miRNA* AGGTGTGACATGAGAACACAT mismatches: 3 bulges: 0 |
pre-miRNA
GCGGGGATATAACAATGGCAGAGACATCCACAGGTGTGACATGAGAACACATGATGATATACTTAGATATTTTCACGTGTTCTCAGGTCGCCCCTGCTGA
ATTTTCTTTGCTTCAACGTGTTGCT
dot-bracket secondary structure
.........(((((..((((((((.((.((((((.(((((.(((((((((.(((.(((((......))))).))).))))))))).))))).)))).)).
))..))))))))......)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGGGATATAACAATGGCAGAGACATCCACAGGTGTGACATGAGAACACATGATGATATACTTAGATATTTTCACGTGTTCTCAGGTCGCCCCTGCTGA
ATTTTCTTTGCTTCAACGTGTTGCT
dot-bracket secondary structure
.........(((((..((((((((.((.((((((.(((((.(((((((((.(((.(((((......))))).))).))))))))).))))).)))).)).
))..))))))))......)))))..
SIMILARITIES| miRBase mtr-MIR398c: 0.0000004 PMRD vvi-miR398c: 0.000006 microPC miR398: 3e-23 | UniProt no hits RFAM MIR398: 0.000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
