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ABOUT THIS RECORD
ID:
MNEST000873
species:
Helianthus paradoxus
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Helianthus paradoxus
Helianthus
Heliantheae
Heliantheae alliance
Asteroideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTCA
miRNA*
AACATGAAGATGAGGTGTTT
mismatches:
4
bulges:
1
View larger
pre-miRNA
ACGGTTCATCA
TCATCATCATCATCATCTTCA
ATAACCATAGTCTCTTTAACAGAACACGAAGAGTTGGAAGAACACGACTTAGGTATTGAAACCGCTCG
TTTCTTGATAGTTTCTCGCTCTGCCCGTTCAAGTGCAGACTTAACTTTATCTAGAGTGCACACACTTTTGTAAGCCGGTGGTGAGGATGATACGTTCACG
AGGTTAAGATCTAGACTCGTGTCGTCGAACAGATTCAAGGGCTTTTTCGACATTGGTGGGAAGTTAAGGTCCTGAAGCTTTGAAACCGTTTGGTCGAAGC
GGTTTTGTTTGTGATCTG
AACATGAAGATGAGGTGTTT
GGTGATTT
dot-bracket secondary structure
.....((((((
.((((.(((((.((((.(((.
....(((....((((((..........)))))).))).(((.(((((.........((((((((((((
...((.(((.(((((..((.......))..((((.(((.(((((((((..((((((((....)))))(((.(((((.....((((..((..(((..((((
((.(((.....))).)))))).)))....))..))))..)))))...)))...)))...)))))))))...)))..)))).))))).))).)).)).)))
))))))).))))).))))
)).)))).)))))))))..)
)))))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record