miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST000873
species: Helianthus paradoxus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTCA

miRNA*
AACATGAAGATGAGGTGTTT

mismatches: 4
bulges: 1

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pre-miRNA
ACGGTTCATCATCATCATCATCATCATCTTCAATAACCATAGTCTCTTTAACAGAACACGAAGAGTTGGAAGAACACGACTTAGGTATTGAAACCGCTCG
TTTCTTGATAGTTTCTCGCTCTGCCCGTTCAAGTGCAGACTTAACTTTATCTAGAGTGCACACACTTTTGTAAGCCGGTGGTGAGGATGATACGTTCACG
AGGTTAAGATCTAGACTCGTGTCGTCGAACAGATTCAAGGGCTTTTTCGACATTGGTGGGAAGTTAAGGTCCTGAAGCTTTGAAACCGTTTGGTCGAAGC
GGTTTTGTTTGTGATCTGAACATGAAGATGAGGTGTTTGGTGATTT


dot-bracket secondary structure
.....((((((.((((.(((((.((((.(((.....(((....((((((..........)))))).))).(((.(((((.........((((((((((((
...((.(((.(((((..((.......))..((((.(((.(((((((((..((((((((....)))))(((.(((((.....((((..((..(((..((((
((.(((.....))).)))))).)))....))..))))..)))))...)))...)))...)))))))))...)))..)))).))))).))).)).)).)))
))))))).))))).)))))).)))).)))))))))..))))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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