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ABOUT THIS RECORD
ID:
MNEST000875
species:
Helianthus petiolaris
miRNA family:
MIR838
source:
miRNEST
Taxonomy by NCBI:
Helianthus petiolaris
Helianthus
Heliantheae
Heliantheae alliance
Asteroideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTCTTCTTCTTCTTGCAGT
miRNA*
GGCAATTAGAAGAAAAGAGC
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTTCGGCGGGGGGGCAGGTGTAGCTGATACGGCCTTGCAGGGAGTAACCTAAACTTTTCCCTCTTTCT
TCTTCTTCTTCTTCTTGCAGT
TTCACCACTTC
TCCCTTTTCATTCGACTTCAGCCTCAGCTTCTCGAATCCTTACGGTATGGCTGAAGCGGAATCAAAGCCTCTTGATTACGTATCAGAGATAGTTCTGAAG
AAACGGAAAAACAACGAGGACTG
GGCAATTAGAAGAAAAGAGC
AGTTGGAACAACGGGTCAAGAGGTCAAAAGTGATCATTTTGTTATAAAGAAGCCCGA
ACAGTTTA
dot-bracket secondary structure
....((.(((((((.((((.(((....(((..(((....))).)))..))).)))).))))))).)).
((((.(((((((..((((...
....(((.(((
((..(((((.(((...(((((((...(((..............)))..)))))))(((.((((((......)))))).))).((((((....)))))).)
))...))))).....))))).))
)))))..)))))))))))..
.....((((..(((((((((((((((....))))).)))))..........))))).
...)))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9SAI5|RL71_ARATH: 0.00002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record