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ABOUT THIS RECORD

ID: MNEST000875
species: Helianthus petiolaris
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCTTCTTCTTCTTGCAGT

miRNA*
GGCAATTAGAAGAAAAGAGC

mismatches: 5
bulges: 1

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pre-miRNA
TTTCGGCGGGGGGGCAGGTGTAGCTGATACGGCCTTGCAGGGAGTAACCTAAACTTTTCCCTCTTTCTTCTTCTTCTTCTTCTTGCAGTTTCACCACTTC
TCCCTTTTCATTCGACTTCAGCCTCAGCTTCTCGAATCCTTACGGTATGGCTGAAGCGGAATCAAAGCCTCTTGATTACGTATCAGAGATAGTTCTGAAG
AAACGGAAAAACAACGAGGACTGGGCAATTAGAAGAAAAGAGCAGTTGGAACAACGGGTCAAGAGGTCAAAAGTGATCATTTTGTTATAAAGAAGCCCGA
ACAGTTTA


dot-bracket secondary structure
....((.(((((((.((((.(((....(((..(((....))).)))..))).)))).))))))).)).((((.(((((((..((((.......(((.(((
((..(((((.(((...(((((((...(((..............)))..)))))))(((.((((((......)))))).))).((((((....)))))).)
))...))))).....))))).)))))))..))))))))))).......((((..(((((((((((((((....))))).)))))..........))))).
...)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9SAI5|RL71_ARATH: 0.00002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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