miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000896
species: Helianthus tuberosus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCACG

miRNA*
AGATGTTGGTTCGGTTCAATA

mismatches: 2
bulges: 0

View larger
pre-miRNA
ATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATGGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATA
TCACG
TGCATGTTGCTTCTAAAT


dot-bracket secondary structure
......((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))
)).))
).))....))))))....



SIMILARITIES
miRBase rco-MIR171a: 0.0000000000004

PMRD vvi-miR171c: 0.0000000004

microPC miR171: 2e-43
UniProt no hits

RFAM MIR171_1: 0.000000000007
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST044914)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;