ABOUT THIS RECORDspecies: Hevea brasiliensis
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Hevea brasiliensis Hevea Micrandreae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGTTCAAGG miRNA* TCGGACCAGGCTTCATTCCTC mismatches: 3 bulges: 0 |
pre-miRNA
AATTGCTTGCTAGGAAGCTTTTCTTTTTGAGGGGAATGTTGTCTGGTTCAAGGTCATGCGATGCTATACATATGATTTGTTTACCTTTTAGCTATTTCTCC
TCGGACCAGGCTTCATTCCTCTCAATTACTGCTTCCATATACATCCATA
dot-bracket secondary structure
)...........((((((........((((((((((((..(((((((((.(((.........((((.(((.......)))........)))).......))
).)))))))))..)))))))))))).....)))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTGCTTGCTAGGAAGCTTTTCTTTTTGAGGGGAATGTTGTCTGGTTCAAGGTCATGCGATGCTATACATATGATTTGTTTACCTTTTAGCTATTTCTCC
TCGGACCAGGCTTCATTCCTCTCAATTACTGCTTCCATATACATCCATA
dot-bracket secondary structure
)...........((((((........((((((((((((..(((((((((.(((.........((((.(((.......)))........)))).......))
).)))))))))..)))))))))))).....)))))).............
SIMILARITIES| miRBase ptc-MIR166i: 2.0E-9 PMRD ptc-miR166i: 2.0E-9 microPC miR166: 5.0E-47 | UniProt no hits RFAM 6mir-166: 9.0E-6 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045618) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
