ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTTCCTAAATATAAGTT miRNA* CTTATATTTAGAAACGGAGGG mismatches: 1 bulges: 0 |
pre-miRNA
ACAAAGTTAATAATATACTCCCTCCGTTCCTAAATATAAGTTTTTAAAAAGGTTTCATTAACGGACTACATACAGATGTATATAGACACACTTTAGAGTG
TAGATTCATTCATTTTGCTTCATATGTAGACTTCTAATGAAATATCTTAAAAGACTTATATTTAGAAACGGAGGGAGTAGCATACTTAGGTAC
dot-bracket secondary structure
((.((((........(((((((((((((.((((((((((((((((.((...(((((((((..((.(((((((..((.(((...((..(((((....))))
).((.....)).)).))).)).))))))).))..)))))))))...)).)))))))))))))))).)))))))))))))....))))..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ACAAAGTTAATAATATACTCCCTCCGTTCCTAAATATAAGTTTTTAAAAAGGTTTCATTAACGGACTACATACAGATGTATATAGACACACTTTAGAGTG
TAGATTCATTCATTTTGCTTCATATGTAGACTTCTAATGAAATATCTTAAAAGACTTATATTTAGAAACGGAGGGAGTAGCATACTTAGGTAC
dot-bracket secondary structure
((.((((........(((((((((((((.((((((((((((((((.((...(((((((((..((.(((((((..((.(((...((..(((((....))))
).((.....)).)).))).)).))))))).))..)))))))))...)).)))))))))))))))).)))))))))))))....))))..))..
SIMILARITIES| miRBase tae-MIR1122: 2e-16 PMRD tae-miR1122: 2e-16 microPC miR1436: 2e-31 | UniProt no hits RFAM MIR1122: 1e-45 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
