ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTGTAAACTAATATAAAAA miRNA* CTTATATTAGTTTACGGAGGG mismatches: 3 bulges: 0 |
pre-miRNA
ACGAGCACTCCCTCTGTAAACTAATATAAAAACGTTTAGATTATTAAAGTAGTGTCCTAAATCTCTTATATTAGTTTACGGAGGGAGTATTAT
dot-bracket secondary structure
......(((((((((((((((((((((((....((((((..(((((...)))))..))))))...))))))))))))))))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGAGCACTCCCTCTGTAAACTAATATAAAAACGTTTAGATTATTAAAGTAGTGTCCTAAATCTCTTATATTAGTTTACGGAGGGAGTATTAT
dot-bracket secondary structure
......(((((((((((((((((((((((....((((((..(((((...)))))..))))))...))))))))))))))))))))))).....
SIMILARITIES| miRBase tae-MIR1121: 0.0003 PMRD tmo-miR1120: 0.000000000001 microPC no hits | UniProt no hits RFAM MIR1122: 2e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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