ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACAGAGGGAGTATG miRNA* TACTCCCTCCGTATCAAAATA mismatches: 2 bulges: 0 |
pre-miRNA
GATAATAGTTTTGTACTCCCTCCGTATCAAAATAAGTGTCGCTGATCCTAGTATAAAATTTGTACTAATTTAGTCATCACTTTGTGACACTTATTTTGGG
ACAGAGGGAGTATGCCGAACTTCT
dot-bracket secondary structure
......((((((((((((((((.((.((((((((((((((((((((..((((((((...)))))))).....)))).......)))))))))))))))).
)).)))))))))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATAATAGTTTTGTACTCCCTCCGTATCAAAATAAGTGTCGCTGATCCTAGTATAAAATTTGTACTAATTTAGTCATCACTTTGTGACACTTATTTTGGG
ACAGAGGGAGTATGCCGAACTTCT
dot-bracket secondary structure
......((((((((((((((((.((.((((((((((((((((((((..((((((((...)))))))).....)))).......)))))))))))))))).
)).)))))))))))..)))))...
SIMILARITIES| miRBase osa-MIR1862d: 0.00002 PMRD osa-miRf11090-akr: 0.000006 microPC miR1439: 0.00002 | UniProt no hits RFAM MIR1122: 2e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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