ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTTTGGGACGGAGGGAGT miRNA* TCCCTCCGTCCCAAAATAAGT mismatches: 0 bulges: 0 |
pre-miRNA
ATTTCTTTGTTACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTGTATTAGCTCTAGTATAAAATTGTATTAAGCTTGAGACACTTATTTTGGGACGGA
GGGAGTACTATTTATC
dot-bracket secondary structure
.......((.((((((((((((((((((((((((((((((..........((((.(((((((....))))))))))))))))))))))))))))))))))
))))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ATTTCTTTGTTACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTGTATTAGCTCTAGTATAAAATTGTATTAAGCTTGAGACACTTATTTTGGGACGGA
GGGAGTACTATTTATC
dot-bracket secondary structure
.......((.((((((((((((((((((((((((((((((..........((((.(((((((....))))))))))))))))))))))))))))))))))
))))))).))......
SIMILARITIES| miRBase far-MIR1122: 0.00000002 PMRD hpr-miR1120: 0.0000000001 microPC miR1439: 3e-38 | UniProt no hits RFAM MIR1122: 1e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
