ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTCCGAGA mismatches: 2 bulges: 0 |
pre-miRNA
TCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTT
TCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGT
dot-bracket secondary structure
..........(((((((((((((((((..((((((((((((((((..((((.(((.((((.....)))).)))..((((.....)))).))))..)))))
)))))))))))..)))))))).....)))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTT
TCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGT
dot-bracket secondary structure
..........(((((((((((((((((..((((((((((((((((..((((.(((.((((.....)))).)))..((((.....)))).))))..)))))
)))))))))))..)))))))).....)))))))))....
SIMILARITIES| miRBase osa-MIR166c: 9e-67 PMRD osa-miR166c: 9e-67 microPC miR166: 8e-52 | UniProt no hits RFAM mir-166: 1e-57 | most similar mature miRNAs |
Identical with: osa-miR166c from PMRD (MNEST048846) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
