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ABOUT THIS RECORD
ID:
MNEST001108
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTACTCCCTCCGTTCCTAAA
miRNA*
TAGGAACGAAGGGAGTAGAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GCATCAACAAGCGTTCAACAA
TGTACTCCCTCCGTTCCTAAA
TATAAGTCTTTTAAGATATTTCACTAGGAGTCTACATACGGAGCAAAATGAATGAATC
TACACTCTAAAGTATGTCTATATACATCCGTATGTAGTCCACTAATGAAATCTTTTTGAAGACTTATATT
TAGGAACGAAGGGAGTAGAAT
GCATGCTGT
TTCAAAAGA
dot-bracket secondary structure
....((.((.((((((.....
..((((((((.((((((((((
(((((((((((.((((.((((((.(((....(((((((((((......((.(((.((.
(((........))).)).))).))..)))))))))))....))).)))))).)))).)))))))))))))
)))))))).))))))))))))
)).)).)).
.........
SIMILARITIES
miRBase
tae-MIR1126
:
1e-23
PMRD
tae-miR1126
:
1e-23
microPC
miR1436
:
4e-36
UniProt
no hits
RFAM
MIR1122: 4e-58
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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