ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTTCCTAAATATAAGAC miRNA* CTTACATTTAGGAACGAAGGG mismatches: 3 bulges: 0 |
pre-miRNA
ATGGTGCGTGCGATATTCTCCCTCCGTTCCTAAATATAAGACTTTTTTGAGATTTCATTAAAGGACTACATACAAAGCAAAATGAATGAATCTACACCCT
AAAGTGTGTCTATATACATCCGTATGTACTTCATTAGTGAAACCTCTAAAAAGACTTACATTTAGGAACGAAGGGAGTATATAGTACAGTATG
dot-bracket secondary structure
...((((((((.((((.((((((.(((((((((((.((((.((((((.(((.(((((((((.(((.(((((((........(((.(((....(((((...
...)))))....))).)))..))))))).))).))))))))).))).)))))).)))).))))))))))).)))))).)))).)))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGGTGCGTGCGATATTCTCCCTCCGTTCCTAAATATAAGACTTTTTTGAGATTTCATTAAAGGACTACATACAAAGCAAAATGAATGAATCTACACCCT
AAAGTGTGTCTATATACATCCGTATGTACTTCATTAGTGAAACCTCTAAAAAGACTTACATTTAGGAACGAAGGGAGTATATAGTACAGTATG
dot-bracket secondary structure
...((((((((.((((.((((((.(((((((((((.((((.((((((.(((.(((((((((.(((.(((((((........(((.(((....(((((...
...)))))....))).)))..))))))).))).))))))))).))).)))))).)))).))))))))))).)))))).)))).)))).)))).
SIMILARITIES| miRBase tae-MIR1126: 5e-20 PMRD tae-miR1126: 5e-20 microPC miR1436: 1e-38 | UniProt no hits RFAM MIR1122: 1e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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