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ABOUT THIS RECORD
ID:
MNEST001118
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTCCGTTCCTAAATATAAGTC
miRNA*
CTTATATTTAGGTATGGAGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AAAATTACTATAGTCTACTCC
CTCCGTTCCTAAATATAAGTC
TTTCTACATGTTTCACTAATGGACTACATACAGATGTATATAGACATACTTTATATAT
AGATGCACTAATTTTGCTTCGCATGTAGACACCTAGTGAAATATCTTAAAAGA
CTTATATTTAGGTATGGAGGA
AGTATATTATTAAATCAA
dot-bracket secondary structure
.........(((((.((((.(
((((((.((((((((((((((
(((....(((((((((((..((.((((((.....((((((((((.....)))))))))
)((.(((.......))).))..))))))...)))))))))))))....)))))
)))))))))))).))))))).
)))).)))))........
SIMILARITIES
miRBase
tae-MIR1126
:
0.0000002
PMRD
tae-miR1126
:
0.0000002
microPC
miR1436
:
8e-22
UniProt
no hits
RFAM
MIR1122: 4e-39
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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