miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001119
species: Hordeum vulgare
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACCCTCTCTCTGTCT

mismatches: 3
bulges: 1

View larger
pre-miRNA
TGGCTGACAGAAGAGAGTGAGCACACAGCGGCAGGCTACGTCTGATAAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATAAGCATCTTTATAGCTC
ATCTTATAGCTGGCTTGTACAATAGTTAGCTGTAAAAGAGTACTACTTTTATCATATATGGCCTACCTTTCATTCTCACAAAGCACCTATGAGCACGTGC
TAGAGCCGGCTCTTCACGAAGAGCCCGCTTCCCTTCTCTCTCCTCTTCTCTCTCATCCAACTCAGCAAANATATAGTATTTTAATCCTTACAGCCTGCTG
ACTGTACCTTATTGTACTTGCTCTAAAGAGGACGGATGGATGCGAAGAGAGAGAGAGATAGACGCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCT


dot-bracket secondary structure
.....((((((((((.((((((((((((((((((((((.((.(((((.((((((((.......((((((((.....)))))))).......)))).))))
...((((((((((((........)))))))))))).(((((...)))))))))).)).))))))..((((...........(((((..........))))
)))))..(((((((....))))))).((.((...((((((((((((((.....((((((..((((((.......((.((....)).)).......)))))
)((((.((((.(((.........))).)))))))).)))))).)))))).))))))))..)).)).))))))))...)))))))).)))).)))))).



SIMILARITIES
miRBase hvu-MIR156: 2e-39

PMRD hvv-miR156a: 6e-166

microPC miR156: 0.000001
UniProt no hits

RFAM mir-156: 0.0000004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record





Liczniki na strone;