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ABOUT THIS RECORD
ID:
MNEST001121
species:
Hordeum vulgare
miRNA family:
MIRf89
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTTTAGTCCCGGTTCGTGTC
miRNA*
CTCAACCCGGGACTAAAGGCC
mismatches:
5
bulges:
0
View larger
pre-miRNA
GTAAGGAG
CCTTTAGTCCCGGTTCGTGTC
CCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCC
CAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGG
CCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGG
CTCAACCCGGGACTAAAGGCC
CAAAC
dot-bracket secondary structure
....((.(
(((((((((((((.....(((
((((.(((((((((((((((((((((((((((......((((((((..((((((((((((...........
......)))))))))))).)).))))))))))))))).)))))((..((((.((((......((((((((((((((.........))))))))))))))(
((...(((((((....)))).)))..))).)))).))))..)).))))))))))))))))).))
).....)))))))))))))))
)....
SIMILARITIES
miRBase
tae-MIR1117
:
0.00002
PMRD
osa-miRf11236-akr
:
0.000000001
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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