ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf88
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAACCGGGACTAAAGGGG miRNA* CCTTTAGTCTCGGGTTGAGCCA mismatches: 5 bulges: 1 |
pre-miRNA
TCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCA
CGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACAC
dot-bracket secondary structure
(((...))).((((..(((((.((.((((..(((((((((...(((((.((...((((((((((((((((..((((((.....(((((........))))
)....))))))...))))))))))).))))).))...)))))..)))))))))......)))).)))))))....)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCA
CGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACAC
dot-bracket secondary structure
(((...))).((((..(((((.((.((((..(((((((((...(((((.((...((((((((((((((((..((((((.....(((((........))))
)....))))))...))))))))))).))))).))...)))))..)))))))))......)))).)))))))....)))).....
SIMILARITIES| miRBase tae-MIR1117: 0.0001 PMRD osa-miRf11236-akr: 0.0000006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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