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ABOUT THIS RECORD
ID:
MNEST001196
species:
Hordeum vulgare
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTAGGAACGGAGTGAGTAGT
miRNA*
TTTCTCATTTCTTTTTGACAG
mismatches:
2
bulges:
2
View larger
pre-miRNA
GCTAAAACGTCGTATATTATATGGTACAGAGGTAGTA
TTTAGGAACGGAGTGAGTAGT
ACATGGTACATACTGATACTGCAACGTACGTAGAAACTAGAG
TAATAATTTGGCAACATAGCAGCTATGAGCCGC
TTTCTCATTTCTTTTTGACAG
CTACCTACCTTGTCTTAGACCGATTATACAACTA
dot-bracket secondary structure
........((.(((((.....(((((((((((((((.
.(((((((.((((((((.(((
....(((.(((((((.((.(((....(((.(((...)))..)
))........)))...)).))).)))).)))))
)..)))))))))))))))..)
))))))...)))).....))))..))))).))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MIR1122: 0.0007
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
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