ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGCTGCCTCAAGCTT miRNA* GCATGAAGCAACAACTGCAGT mismatches: 3 bulges: 0 |
pre-miRNA
GTGGCGGCACCAAGCATGAAGCAACAACTGCAGTACTTGTGGGGAAAGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAAC
ATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCC
dot-bracket secondary structure
..((.((((.(((((.(((.(((.((((((((..(((((((((.((((((((((((.((.............(((.........))).............
.))....))))))).))))))))))))))..)))))))).))).))).))))).)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
GTGGCGGCACCAAGCATGAAGCAACAACTGCAGTACTTGTGGGGAAAGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAAC
ATCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCC
dot-bracket secondary structure
..((.((((.(((((.(((.(((.((((((((..(((((((((.((((((((((((.((.............(((.........))).............
.))....))))))).))))))))))))))..)))))))).))).))).))))).)))).)).
SIMILARITIES| miRBase hvu-MIR444a: 6e-59 PMRD tae-miR444: 1e-57 microPC miR444: 2e-77 | UniProt no hits RFAM MIR444: 1e-82 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
