ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTGTAAACTAATATAAGAG miRNA* CTTATATTAGTTTACGGAGGG mismatches: 0 bulges: 0 |
pre-miRNA
TCTTTTTTTAACAAATACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATTACTAAAATAGTGTTCTAAATGCTCTTATATTAGTTTACGGAGGGAGTA
CTTTAGCACGTTAG
dot-bracket secondary structure
...............(((((((((((((((((((((((((((((((((((.(((((...))))).)))))))))))))))))))))))))))))))))))
..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTTTTTTAACAAATACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATTACTAAAATAGTGTTCTAAATGCTCTTATATTAGTTTACGGAGGGAGTA
CTTTAGCACGTTAG
dot-bracket secondary structure
...............(((((((((((((((((((((((((((((((((((.(((((...))))).)))))))))))))))))))))))))))))))))))
..............
SIMILARITIES| miRBase tae-MIR1121: 3e-20 PMRD tae-miR1121: 3e-20 microPC no hits | UniProt no hits RFAM MIR1122: 4e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
