ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACAGAGGAAGTACT miRNA* ATACTCCCTCCGTCCCAAAATA mismatches: 2 bulges: 1 |
pre-miRNA
ATACTCTTAGATACTCCCTCCGTCCCAAAATAAGTGTCTTAATTTATACTAGCTTTAATACAAATTTGTATTAAGCTTGAGACAGTTATTTTGGGACAGA
GGAAGTACTAAATTAC
dot-bracket secondary structure
......((((.((((.((((.((((((((((((.(((((((.........(((((.((((((....)))))))))))))))))).)))))))))))).))
)).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATACTCTTAGATACTCCCTCCGTCCCAAAATAAGTGTCTTAATTTATACTAGCTTTAATACAAATTTGTATTAAGCTTGAGACAGTTATTTTGGGACAGA
GGAAGTACTAAATTAC
dot-bracket secondary structure
......((((.((((.((((.((((((((((((.(((((((.........(((((.((((((....)))))))))))))))))).)))))))))))).))
)).)))))))).....
SIMILARITIES| miRBase osa-MIR1862e: 0.000001 PMRD hpr-miR1120: 0.00000009 microPC miR1439: 0.00000000000003 | UniProt no hits RFAM MIR1122: 8e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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