ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCTGTCCCAAAATAAGT miRNA* TTATTTTGATACGGAGGGAGT mismatches: 2 bulges: 0 |
pre-miRNA
GTTCGGCATACTCCCTCTGTCCCAAAATAAGTGTCACAAATTTATAACTAAATTAGTACAAATTTTATACTAAATCAGCGACACTTATTTTGATACGGAG
GGAGTACAAAACT
dot-bracket secondary structure
........((((((((((((..(((((((((((((....(((((.....(((((......))))).....)))))....)))))))))))))..))))))
)))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTTCGGCATACTCCCTCTGTCCCAAAATAAGTGTCACAAATTTATAACTAAATTAGTACAAATTTTATACTAAATCAGCGACACTTATTTTGATACGGAG
GGAGTACAAAACT
dot-bracket secondary structure
........((((((((((((..(((((((((((((....(((((.....(((((......))))).....)))))....)))))))))))))..))))))
)))))).......
SIMILARITIES| miRBase osa-MIR1862d: 0.00002 PMRD hpr-miR1120: 0.000001 microPC miR1439: 0.00002 | UniProt no hits RFAM MIR1122: 3e-54 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
