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ABOUT THIS RECORD
ID:
MNEST001279
species:
Jatropha curcas
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Jatropha curcas
Jatropha
Jatropheae
Crotonoideae
Euphorbiaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACATCATCATCATCTTCTTCT
miRNA*
GAGAATGATGATGATGAACAGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TTCAATTCTCT
ACATCATCATCATCTTCTTCT
TCTTCTGCTTATAACACTACCCCTCCTTTCACTGTTTCTACTTGTTCTGCCTCTGCTTCTTCCTCTGT
TTCGTCTTTCTCATCTTCTGCATCTTCAAGACTTTTGTTTCCTTTTGCATTTGAAGGATGTAATAATCAACCTATCCAATTTCCTCACCAATTTAAAACA
AACCCTTCTTTTCCTTATTACCGTCCAACAATACAAAATCAACAACAAATGATTTCTTTTAATCAAAGCCAGCAACAGAGCATCACTAATCCTCTGTTTT
TCGCTGGAGAATCTGCATTAGCCCACCACCACCAACAACAGCAACAGCTTTTTCAATATTGGAGTGATACATTGAACTTAAGTCCAAGAGG
GAGAATGAT
GATGATGAACAGA
GCAGGCCC
dot-bracket secondary structure
.......((((
...((((((((((((((((((
((((..(((((................((((.(((.((.((((...........(((.......((((
(.............((..(((((((((......((((((...(((((...(((..(((((((((((..................................
..............)))))).)))))..)))..))))).....))))))(((((......))))).(((.((.(((((((.((.....)).))))))).)
).))))))))...))))..))...............)))))....))).............)))))).))).))))..)))))..))))))
))))).)))
))))))))..)))
).......
SIMILARITIES
miRBase
no hits
PMRD
ghr-miR414f
:
0.0000004
microPC
no hits
UniProt
sp|Q9M0J3|ERF54_ARATH: 0.0007
RFAM
mir-598: 0.000007
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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