ABOUT THIS RECORDspecies: Juglans hindsii x Juglans regia
miRNA family: MIRf196
source: miRNEST
Taxonomy by NCBI:
Juglans hindsii x Juglans regia Juglans Juglandaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGCTCTGATACCATGTTG miRNA* ATGTTTTATAAGGCTTTTGA mismatches: 3 bulges: 1 |
pre-miRNA
GAAGTCTCAATATATGCTAGTTAAACCTGTAGAAATATGATAAAAGCTCTGATACCATGTTGAAAACAATGTTTTATAAGGCTTTTGATTTTTCTTTAGT
TTCCTGGCAAACTGTGAAGACAGTTA
dot-bracket secondary structure
((....))......((((((..((((.((.(((((.((..(((((((.((.(((..((((((....))))))..))).))))))))))).))))).))))
)).))))))((((((....)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAGTCTCAATATATGCTAGTTAAACCTGTAGAAATATGATAAAAGCTCTGATACCATGTTGAAAACAATGTTTTATAAGGCTTTTGATTTTTCTTTAGT
TTCCTGGCAAACTGTGAAGACAGTTA
dot-bracket secondary structure
((....))......((((((..((((.((.(((((.((..(((((((.((.(((..((((((....))))))..))).))))))))))).))))).))))
)).))))))((((((....)))))).
SIMILARITIES| miRBase gma-MIR1527: 0.0004 PMRD gma-miR1527: 0.0004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
