ABOUT THIS RECORDspecies: Lactuca perennis
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCTTCTTCT miRNA* AGGAGGGTATGGTGGAAGAAG mismatches: 1 bulges: 2 |
pre-miRNA
GATGCTGAAACTGGCTACATGTCATCATCATCATCTTCTTCTTCAAGACCTTGTTTCTCCAGTGGGGCTGCAGCGGCGGCAGCTGACGTGGGTGGATCCT
GTGCTGCGGCAAAAAGGGTTACCGGAAAGTCATGGAGAAGTGGGTTTGGAGGGTATCGCAGGGAGGAGGGTATGGTGGAAGAAGATGAAGCCGAGTCGAG
GG
dot-bracket secondary structure
.....(((...(((((.(((.((.(((((((.(((((((((((..((((((..((((((((((...(((((....))))).)).(((.(((...((((((
.(((....)))...)))))).)))....))).)))))))).)))))).((.....))...))))))))))))))))))..))..))).)))))..)))..
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGCTGAAACTGGCTACATGTCATCATCATCATCTTCTTCTTCAAGACCTTGTTTCTCCAGTGGGGCTGCAGCGGCGGCAGCTGACGTGGGTGGATCCT
GTGCTGCGGCAAAAAGGGTTACCGGAAAGTCATGGAGAAGTGGGTTTGGAGGGTATCGCAGGGAGGAGGGTATGGTGGAAGAAGATGAAGCCGAGTCGAG
GG
dot-bracket secondary structure
.....(((...(((((.(((.((.(((((((.(((((((((((..((((((..((((((((((...(((((....))))).)).(((.(((...((((((
.(((....)))...)))))).)))....))).)))))))).)))))).((.....))...))))))))))))))))))..))..))).)))))..)))..
..
SIMILARITIES| miRBase no hits PMRD ghr-miR414f: 0.00001 microPC no hits | UniProt no hits RFAM mir-598: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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