miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001306
species: Lactuca saligna
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGTGAAGGGAGCTCCTC

miRNA*
 GGAGCTCTCTATCGCCTCAACC

mismatches: 2
bulges: 1
View larger
pre-miRNA
 ATATTTATGGTTGGAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATG
GTGTTGTAGTGTGCATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTCCTCCCATGATCA

dot-bracket secondary structure
....((((((..((((((((((.(((((((((.((((((((((.(((((..........((((((((.((((((((((...((((...(((((((((((.
..))))....)))))))...))))...)))))))).)))))))))).)))))..)))))))))).)))))))))))))))))))..))))))...


SIMILARITIES
miRBase ptc-MIR159e: 0.0006

PMRD ptc-miR159e: 0.0006

microPC miR159: 3e-95		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045899)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;