ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR2025
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCTGC miRNA* AGGTGCGATATGAGAACACAT mismatches: 3 bulges: 0 |
pre-miRNA
CAAATGGTAGAGGCATCCAACAGGTGCGATATGAGAACACATGTTAAATGTGCAACAAATCACATTCCGCCACGTGTTCTCAGGTCGCCCCTGCAGGGTT
TTTCTCTGCTCG
dot-bracket secondary structure
.....((((((((.((((..((((.(((((.(((((((((.((...((((((........))))))....)).))))))))).))))).))))..)))).
..))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAATGGTAGAGGCATCCAACAGGTGCGATATGAGAACACATGTTAAATGTGCAACAAATCACATTCCGCCACGTGTTCTCAGGTCGCCCCTGCAGGGTT
TTTCTCTGCTCG
dot-bracket secondary structure
.....((((((((.((((..((((.(((((.(((((((((.((...((((((........))))))....)).))))))))).))))).))))..)))).
..))))))))..
SIMILARITIES| miRBase tcc-MIR398a: 0.0000003 PMRD vvi-miR398c: 0.00008 microPC miR398: 8e-36 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST045163) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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