ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATGTTCATCATCATCGTCT miRNA* ATGATGATGATGATCAGAACG mismatches: 5 bulges: 0 |
pre-miRNA
CTACTTCTACATCATGTTCATCATCATCGTCTTCATTTAGTTTCTTTAGCTTTAGACCCTTCAATAAGCGCTTTCATTTCATTAACCCACCTCGTTCTTC
CCTCAAACAAACCAAAAAACAGCAACGAACCCTTCAAACTAATGCCCCACCGCCACAAAGCAGCATCAGAAGACTCTTGAACTTGAACGATAATCCTAAA
GATGATGGTGGTGGTGGAAATGATGATGATGATGATGATCAGAACGAGACTGCG
dot-bracket secondary structure
.....(((......((.((((((((((((((.((((((.(........((((..((....))...))))........).(((((.........((((...
..........................)))).........)))))..((((((((((.......((((.................................
))))...)))))))))))))))).)))))))))))))).)).....))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTACTTCTACATCATGTTCATCATCATCGTCTTCATTTAGTTTCTTTAGCTTTAGACCCTTCAATAAGCGCTTTCATTTCATTAACCCACCTCGTTCTTC
CCTCAAACAAACCAAAAAACAGCAACGAACCCTTCAAACTAATGCCCCACCGCCACAAAGCAGCATCAGAAGACTCTTGAACTTGAACGATAATCCTAAA
GATGATGGTGGTGGTGGAAATGATGATGATGATGATGATCAGAACGAGACTGCG
dot-bracket secondary structure
.....(((......((.((((((((((((((.((((((.(........((((..((....))...))))........).(((((.........((((...
..........................)))).........)))))..((((((((((.......((((.................................
))))...)))))))))))))))).)))))))))))))).)).....))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
