ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf93
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCAAGTATCTTGGTTTTGCA miRNA* CAGATTCTAAGATGCTTAATGC mismatches: 4 bulges: 1 |
pre-miRNA
GGAGTGCATGTGCCAAGTATCTTGGTTTTGCAATAGGAGTGCATGAGTTGGACAACAGAACTCCATGAATTCTTTGTGGAAGGAGTCAACCAACTTGGCG
GTAATGAAAGAGCTATACTAAAAGGAGTTTTGAAGCTCATTAATATTGAAAGTTTTACAATTTATCATGTGAAAAGTCATCTGCAGATTCTAAGATGCTT
AATGCATTGTTCA
dot-bracket secondary structure
..(((((((.....(((((((((((.((((((...(((((.......(((.....))).))))).(((.((((((...)))))).)))(((........)
)).((.((.(((((..(((......))).....))))).)).))..(((...(((((((........)))))))..)))..))))))..)))))))))))
.))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGAGTGCATGTGCCAAGTATCTTGGTTTTGCAATAGGAGTGCATGAGTTGGACAACAGAACTCCATGAATTCTTTGTGGAAGGAGTCAACCAACTTGGCG
GTAATGAAAGAGCTATACTAAAAGGAGTTTTGAAGCTCATTAATATTGAAAGTTTTACAATTTATCATGTGAAAAGTCATCTGCAGATTCTAAGATGCTT
AATGCATTGTTCA
dot-bracket secondary structure
..(((((((.....(((((((((((.((((((...(((((.......(((.....))).))))).(((.((((((...)))))).)))(((........)
)).((.((.(((((..(((......))).....))))).)).))..(((...(((((((........)))))))..)))..))))))..)))))))))))
.))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q941I2|KAN3_ARATH: 0.000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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