miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST001312
species: Lactuca sativa
miRNA family: MIRf1445
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCTTATTCAAGAAGGCCAGA

miRNA*
CAGTAGTTCTTTGAAAAGTTAT

mismatches: 5
bulges: 1

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pre-miRNA
AAGTCCAGTATCCAGTAGTTCTTTGAAAAGTTATTCAGTGAAAACATCACTCGATTTTCCATCATCAGTTCTCAGAATCGATGAGAGCCCATCACCTGCT
TCTCTTGATTCTGTTGTGGTCCCAGGAATAGGTACCACAGAATGTGAAAAATACAGTACCAGCCCTATCAATTCACACGATTGTTTGGAGACTGATCAGC
TTATTCAAGAAGGCCAGA
TAGTGGACC


dot-bracket secondary structure
..(((((.((((..((..(((((.((.(((((..(((((((.....)))).....((((((....(((((..(((((((((.((((((.........)).
)))))))))))))(((((((.((.......)).)))))))..((((((.......................)))))).)))))..)))))).)))..)))
)).)).))))).))..))
)).))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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